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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17704734_17706508_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17704734 - 17706508
Intron Length:
1775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TACAATTTATTT
Flanking Amino Acid:
FSLGKTLSVELGKKKKKFMP
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
47.4
-0.1
1.7
62.49
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002427
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025890
17698613 - 17706598
7986