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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17708748_17709914_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17708748 - 17709914
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TATAGCTAAATC
Flanking Amino Acid:
DKNKDWVSTQLHATCNVNQS
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
84.6
0.78
0.7
77
31.7
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
49.1
-0
2.1
64.03
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017572
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044379
17708047 - 17711442
3396