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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17709995_17710187_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17709995 - 17710187
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTCAATTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCTTATTCAATT
Flanking Amino Acid:
TGHLNFQIEHHLFPTMPRHN
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79.3
0.66
0.9
73.3
36.7
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
59
0.36
1.7
76.82
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017572
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044379
17708047 - 17711442
3396