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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17710314_17711114_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17710314 - 17711114
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTTCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTGTTTTAATT
Flanking Amino Acid:
TLLGAFVDILHSLKESGEHW
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.1
0.66
0.9
76.5
32.1
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
68.4
0.66
1.3
79.54
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017572
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044379
17708047 - 17711442
3396