Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17742097_17745561_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17742097 - 17745561

Intron Length:

3465

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGGAT

5'SS Class:

major

3'SS Sequence:

TCTGCGTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTTTCTTATCT

Flanking Amino Acid:

LSSHAGQDVTDAFVAFHVDK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

69.5

36.8

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

79.1

0.65

0.9

72.4

37.7

Minor 5ss

25.9

-2.8

3.5

46.9

Minor BPS

79.8

1.01

1.4

95.48

31.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001151

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001252

17741803 - 17754181

12379