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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17747528_17748277_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17747528 - 17748277
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTTTGTGCCACT
Flanking Amino Acid:
VSLVMLSTSQVQASWLQHDL
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
41.1
-0.6
2.7
71.32
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001151
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001252
17741803 - 17754181
12379