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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17748380_17748540_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17748380 - 17748540
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTCACTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTCACTTAAAC
Flanking Amino Acid:
LHKFVMCHLIGASAKWWTLL
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.1
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.8
0.45
1
66
38.7
Minor 5ss
36.9
-1.5
3.4
55
43.6
Minor BPS
61
0.33
1.7
70.52
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001151
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001252
17741803 - 17754181
12379