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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17750096_17750419_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17750096 - 17750419
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTCTCCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTCTCCATTACA
Flanking Amino Acid:
YNHQHKYFFITLPPLLFPTY
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
0.9
76.8
31.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
83.1
0.74
0.8
77
30.2
Minor 5ss
36.7
-1.5
2.9
47.4
36.1
Minor BPS
61.6
0.36
2
76.65
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001151
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001252
17741803 - 17754181
12379