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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17752090_17753061_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17752090 - 17753061
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CCTGTACTAATT
Flanking Amino Acid:
DKNLDWVSTQLQATCNVEQS
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.5
0.69
0.7
72.4
32.3
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
44.8
-0.3
2
60.58
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001151
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001252
17741803 - 17754181
12379