About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17753142_17753816_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17753142 - 17753816
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCTCCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TCTCCTTTCACA
Flanking Amino Acid:
TGHLNFQIEHHLFPTMPRHN
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
62
0.3
1
53
34.1
Major PPT
83.8
0.76
0.7
78.9
26.6
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
62
0.37
1.8
72.26
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001151
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001252
17741803 - 17754181
12379