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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17753943_17754129_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17753943 - 17754129
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTACATGTAATG
Flanking Amino Acid:
PLLTAFADIVHSLKNSGELW
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.9
0.81
0.7
84.4
23.4
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
42.4
-0.7
2.1
46.08
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001151
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001252
17741803 - 17754181
12379