Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17771870_17773522_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

17771870 - 17773522

Intron Length:

1653

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGCGTGCG

5'SS Class:

major

3'SS Sequence:

CTTTCTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAAAC

U12 Branch Point Sequence:

TTTTTCTTGACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

58.7

40.4

Major BPS

67.4

0.43

73.2

28.9

Major PPT

86.2

0.81

0.8

84.1

30.8

Minor 5ss

26.6

-2.7

3.1

38.3

Minor BPS

87.9

1.28

0.8

98.86

22.7

Associated Gene:

Gene:

CPT1A

Ensembl Gene ID:

ENSAPLG00000015970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033643

17771593 - 17807380

35788

ENSAPLT00000016712

17771593 - 17806802

35210