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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17784765_17787978_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17784765 - 17787978
Intron Length:
3214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GGGTGTGTATTC
Flanking Amino Acid:
KLSAGTKLWMSLVKLFSGRK
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
80.5
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
90.5
0.91
0.7
89
28.1
Minor 5ss
36
-1.6
3.3
45.4
43.9
Minor BPS
37.1
-1
2.3
42.75
39.2

Associated Gene:

Gene:
CPT1A
Ensembl Gene ID:
ENSAPLG00000015970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033643
17771593 - 17807380
35788
ENSAPLT00000016712
17771593 - 17806802
35210