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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17792219_17794319_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17792219 - 17794319
Intron Length:
2101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTACAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
NTSRIPGVESDTLQHVKDSK
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67
0.38
1
56.9
42.8
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
CPT1A
Ensembl Gene ID:
ENSAPLG00000015970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033643
17771593 - 17807380
35788
ENSAPLT00000016712
17771593 - 17806802
35210