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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17797937_17798707_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17797937 - 17798707
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTTATT
Flanking Amino Acid:
TKLQWDIPEECQEVIERSLS
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
85.3
27.8
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
63.1
0.49
1.6
78.47
38.5

Associated Gene:

Gene:
CPT1A
Ensembl Gene ID:
ENSAPLG00000015970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033643
17771593 - 17807380
35788
ENSAPLT00000016712
17771593 - 17806802
35210