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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17798873_17802670_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17798873 - 17802670
Intron Length:
3798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
QLALQLAHYRNENKLKFFRL
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.1
0.81
0.7
85.1
29.3
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
CPT1A
Ensembl Gene ID:
ENSAPLG00000015970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016712
17771593 - 17806802
35210