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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17800228_17802670_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17800228 - 17802670
Intron Length:
2443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTCATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
VRTMEDPTESNENKLKFFRL
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
75
38.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.1
0.81
0.7
85.1
29.3
Minor 5ss
44.7
-0.6
2.8
53.7
43.8
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
CPT1A
Ensembl Gene ID:
ENSAPLG00000015970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033643
17771593 - 17807380
35788