About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17851546_17851970_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17851546 - 17851970
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATAG
5'SS Class:
major
3'SS Sequence:
ATTTATTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGATTTTTAATT
Flanking Amino Acid:
ARGREDAPGAYAVDNHRSFS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
70.7
35.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78
0.63
1
77.6
40.7
Minor 5ss
39.7
-1.2
3.1
52
44.9
Minor BPS
73.2
0.81
1.1
80.88
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025669
17847092 - 17854624
7533