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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17852043_17853095_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17852043 - 17853095
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TCCTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTATCTAAGACT
Flanking Amino Acid:
LNSAGYLLGPRRIDQLLLIK
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
74.1
38.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84.3
0.77
0.8
79.6
32.4
Minor 5ss
34.9
-1.7
2.9
40.4
38.9
Minor BPS
51.4
0.12
2
76.66
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025669
17847092 - 17854624
7533