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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1786324_1787377_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1786324 - 1787377
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
GTTTCAAGCATT
Flanking Amino Acid:
HEGLIRLIEPGSKNPHLITN
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
42.8
-0.4
2.3
68.16
42.3

Associated Gene:

Gene:
SWAP70
Ensembl Gene ID:
ENSAPLG00000003053
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003150
1786214 - 1820797
34584