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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1787475_1789033_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1787475 - 1789033
Intron Length:
1559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTT
Flanking Amino Acid:
ERKEALEQYEEVKKKLETAA
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
SWAP70
Ensembl Gene ID:
ENSAPLG00000003053
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003150
1786214 - 1820797
34584