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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17886480_17889074_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17886480 - 17889074
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
LQPTNSSPEQSVFSA*
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72
0.5
1.1
76.4
35.8
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036920
17886357 - 17925684
39328
ENSAPLT00000027982
17886357 - 17925111
38755
ENSAPLT00000026396
17886357 - 17925684
39328