About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17888689_17889074_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17888689 - 17889074
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCATTTTTGATT
Flanking Amino Acid:
LQPTNSSPEQRTAGGSLSVQ
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.2
0.77
0.8
78.7
34.1
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
58.2
0.34
1.2
65.91
39.9

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026871
17888467 - 17925684
37218