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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17889198_17889511_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17889198 - 17889511
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
AVFKRVLKSYREEGKLSTSQ
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.1
34.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76.3
0.59
0.8
76.9
30.7
Minor 5ss
45.9
-0.4
2.5
60.3
44.3
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026871
17888467 - 17925684
37218