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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17889198_17891192_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17889198 - 17891192
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTA
5'SS Class:
major
3'SS Sequence:
TCCTTTTACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
RVTHWELKTSVRKENCLPRR
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
77.9
32.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76.3
0.59
0.8
76.9
30.7
Minor 5ss
46.2
-0.4
2.4
58.8
45.7
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018769
17889075 - 17925684
36610