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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17889198_17891600_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17889198 - 17891600
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
DAKTETAVFKSEEGKLSTSQ
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76.3
0.59
0.8
76.9
30.7
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026396
17886357 - 17925684
39328
ENSAPLT00000021209
17884476 - 17925684
41209
ENSAPLT00000016208
17884018 - 17925684
41667
ENSAPLT00000036920
17886357 - 17925684
39328
ENSAPLT00000027982
17886357 - 17925111
38755