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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17894110_17895511_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17894110 - 17895511
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
ATCGCTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTATTCCTAATG
Flanking Amino Acid:
EDKMEVDLNEPPNWSANFDV
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
68.8
42.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.2
0.54
0.9
65.8
40.3
Minor 5ss
43.5
-0.7
2.5
53.1
37.4
Minor BPS
54.8
0.01
1.8
60.26
42

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018769
17889075 - 17925684
36610
ENSAPLT00000027982
17886357 - 17925111
38755
ENSAPLT00000017318
17890421 - 17925684
35264
ENSAPLT00000026871
17888467 - 17925684
37218
ENSAPLT00000016208
17884018 - 17925684
41667
ENSAPLT00000026396
17886357 - 17925684
39328
ENSAPLT00000041346
17890421 - 17925684
35264
ENSAPLT00000021209
17884476 - 17925684
41209
ENSAPLT00000036920
17886357 - 17925684
39328