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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17899690_17903018_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17899690 - 17903018
Intron Length:
3329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTGACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTGACC
Flanking Amino Acid:
GFSQDSSLQQFGFNDEKFAD
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.8
0.58
1
70.6
44.1
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
66.2
0.49
1.6
76.89
32.4

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026396
17886357 - 17925684
39328