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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17905861_17906245_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17905861 - 17906245
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTACTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TATTACATAGCT
Flanking Amino Acid:
NSTLVQQLIKELPEEVRERW
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
73.9
0.59
1
81
30.2
Major PPT
79.2
0.66
0.8
74.1
29.5
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
54.3
0.21
2
79.9
41.2

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018769
17889075 - 17925684
36610
ENSAPLT00000027982
17886357 - 17925111
38755
ENSAPLT00000017318
17890421 - 17925684
35264
ENSAPLT00000026871
17888467 - 17925684
37218
ENSAPLT00000016208
17884018 - 17925684
41667
ENSAPLT00000026396
17886357 - 17925684
39328
ENSAPLT00000041346
17890421 - 17925684
35264
ENSAPLT00000021209
17884476 - 17925684
41209
ENSAPLT00000036920
17886357 - 17925684
39328