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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17906362_17907433_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17906362 - 17907433
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTCTATCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTTTCTATCT
Flanking Amino Acid:
LEAWEMNEKKQAEGGRRHGY
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.1
0.81
0.8
80.8
30.8
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
51.9
0.14
1.9
75.57
41.7

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018769
17889075 - 17925684
36610
ENSAPLT00000027982
17886357 - 17925111
38755
ENSAPLT00000017318
17890421 - 17925684
35264
ENSAPLT00000026871
17888467 - 17925684
37218
ENSAPLT00000016208
17884018 - 17925684
41667
ENSAPLT00000026396
17886357 - 17925684
39328
ENSAPLT00000041346
17890421 - 17925684
35264
ENSAPLT00000021209
17884476 - 17925684
41209
ENSAPLT00000036920
17886357 - 17925684
39328