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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17907499_17908029_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17907499 - 17908029
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TGTTTTTTCATA
Flanking Amino Acid:
STGDNLLLKHLFHKCQLIER
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
83.6
0.76
0.7
80.1
32
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
58.8
0.27
1.7
70.9
36

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017318
17890421 - 17925684
35264
ENSAPLT00000026871
17888467 - 17925684
37218
ENSAPLT00000016208
17884018 - 17925684
41667
ENSAPLT00000026396
17886357 - 17925684
39328
ENSAPLT00000041346
17890421 - 17925684
35264
ENSAPLT00000021209
17884476 - 17925684
41209
ENSAPLT00000036920
17886357 - 17925684
39328
ENSAPLT00000018769
17889075 - 17925684
36610
ENSAPLT00000027982
17886357 - 17925111
38755