About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17912002_17912724_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17912002 - 17912724
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGCCAATACTT
Flanking Amino Acid:
EPDPLLASLEKREIIEQLLS
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
77.7
33.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.3
0.84
0.7
84.9
29.1
Minor 5ss
41.3
-1
2.8
49.5
41.1
Minor BPS
43.5
-0.4
2
62.12
41.7

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041346
17890421 - 17925684
35264
ENSAPLT00000016208
17884018 - 17925684
41667
ENSAPLT00000026396
17886357 - 17925684
39328
ENSAPLT00000036920
17886357 - 17925684
39328
ENSAPLT00000021209
17884476 - 17925684
41209
ENSAPLT00000018769
17889075 - 17925684
36610
ENSAPLT00000027982
17886357 - 17925111
38755
ENSAPLT00000017318
17890421 - 17925684
35264
ENSAPLT00000026871
17888467 - 17925684
37218