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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1791791_1795366_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1791791 - 1795366
Intron Length:
3576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGTA
5'SS Class:
major
3'SS Sequence:
TTTTCTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTCTTGATCC
Flanking Amino Acid:
KQKELETVRKQLEAAAARAA
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
71.2
34.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
89.3
0.88
0.7
81.9
34.4
Minor 5ss
27.2
-2.6
3.6
37.3
47.4
Minor BPS
65.4
0.46
1.7
79.17
36.2

Associated Gene:

Gene:
SWAP70
Ensembl Gene ID:
ENSAPLG00000003053
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003150
1786214 - 1820797
34584