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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17925112_17925519_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17925112 - 17925519
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
ATTTGTTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
56.5
0.2
2.1
73.19
38.6

Associated Gene:

Gene:
PPP6R3
Ensembl Gene ID:
ENSAPLG00000015481
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018769
17889075 - 17925684
36610
ENSAPLT00000036920
17886357 - 17925684
39328
ENSAPLT00000016208
17884018 - 17925684
41667
ENSAPLT00000026871
17888467 - 17925684
37218
ENSAPLT00000026396
17886357 - 17925684
39328
ENSAPLT00000021209
17884476 - 17925684
41209