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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17975233_17975711_F

Intron Information:

Intron Rank:
140044
Intron Class:
major
Intron Phase:
Intron Coordinates:
17975233 - 17975711
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTCTTAATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTCTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
61.7
38.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.5
0.71
0.9
82.7
32.7
Minor 5ss
32
-2.1
3
45.5
42.6
Minor BPS
81.1
0.96
1
82.67
30.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025291
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047654
17975093 - 17986687
11595