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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17975808_17982907_F

Intron Information:

Intron Rank:
140045
Intron Class:
major
Intron Phase:
Intron Coordinates:
17975808 - 17982907
Intron Length:
7100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TTTCTGGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
CCCTCAGTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
70.7
35.8
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
78.1
0.63
0.9
73.1
37.2
Minor 5ss
47.1
-0.3
2.4
59.5
45
Minor BPS
43
-0.5
2.2
50.37
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025291
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047654
17975093 - 17986687
11595