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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_17997793_17998810_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17997793 - 17998810
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTAAA
5'SS Class:
major
3'SS Sequence:
TATTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
VMWNNEDYLMVLTEKKYMGK
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
77.1
32.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.8
0.76
0.8
82.6
33.4
Minor 5ss
31.5
-2.1
2.4
32.1
35.7
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055