Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18003213_18004200_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18003213 - 18004200

Intron Length:

988

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCATTT

5'SS Class:

weak_major

3'SS Sequence:

CCTTCTTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

GATACAGAAAAG

Flanking Amino Acid:

HCTYGCFCPEGTVLDDISKN

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.2

74.2

37.1

Major BPS

76.8

0.67

40.9

Major PPT

78.5

0.64

0.9

75.8

32.6

Minor 5ss

69.3

0.65

2.3

82.5

37.1

Minor BPS

35.8

-1.2

2.3

40.88

42.4

Associated Gene:

Gene:

MUC6

Ensembl Gene ID:

ENSAPLG00000015143

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015803

17995819 - 18018873

23055