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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18004322_18005191_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18004322 - 18005191
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
CTTACGCCAACT
Flanking Amino Acid:
GETMKAACRTCKCTMGQWNC
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
44.2
-0.3
2.5
69.83
46.5

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055