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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1800472_1809231_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1800472 - 1809231
Intron Length:
8760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
AAATGATTAATT
Flanking Amino Acid:
KYPLIIVPEEIEYLLKKITE
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
77.5
0.62
0.9
72.2
37.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
51.5
0.12
2
69.95
40.7

Associated Gene:

Gene:
SWAP70
Ensembl Gene ID:
ENSAPLG00000003053
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003150
1786214 - 1820797
34584