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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18005411_18005500_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
18005411 - 18005500
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCTGAGGTG
5'SS Class:
weak_major
3'SS Sequence:
TTCAGAGTTCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
KSTFSIFLEHNLPNNGTLMA
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.3
54.3
40.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
57.3
0.16
1.2
52.7
45.3
Minor 5ss
18.5
-3.6
4.2
28.9
37.9
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055