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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18006480_18007570_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18006480 - 18007570
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTAATGTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCATCTTTTACA
Flanking Amino Acid:
VGSQFKGRTLGLCGNYNGDT
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
64.3
0.32
1
62.9
42.7
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
65.4
0.48
1.6
71.7
40.3

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055