About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18007733_18008786_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18007733 - 18008786
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGGTGTTTAATG
Flanking Amino Acid:
TDPCALSQLNKISAETHCSI
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
84.3
0.77
0.7
84.8
30
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
55.3
0.03
1.8
59.33
43.3

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055