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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18012262_18013071_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18012262 - 18013071
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TGATCTTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATCTTTACCA
Flanking Amino Acid:
CQMLATGIECIPTKCESGCV
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
71.3
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
73.4
0.53
1
66.7
43.7
Minor 5ss
41.3
-1
3
53.4
43.8
Minor BPS
65.6
0.49
1.6
72.84
39

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055