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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18013224_18014006_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18013224 - 18014006
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCTTCTCACTC
Flanking Amino Acid:
GEQIQTECEICTCRKGKWKC
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.2
0.63
0.8
69.8
35.5
Minor 5ss
33.9
-1.8
3.7
46.6
43.5
Minor BPS
47.9
-0.1
1.8
57.18
42.5

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055