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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18014861_18016137_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18014861 - 18016137
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ATACACGTAATT
Flanking Amino Acid:
CSRSISIYLGNLTLVLRDET
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85.3
0.79
0.9
77.4
41.2
Minor 5ss
40.1
-1.1
3.1
49.7
46.1
Minor BPS
48.5
-0
2.1
70.02
40.6

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055