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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18018135_18018628_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18018135 - 18018628
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTTCTCTGAAGA
Flanking Amino Acid:
NQNYKYVNIEGCYNCSHDEY
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.5
28.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.6
0.8
0.7
83.9
24.2
Minor 5ss
32.1
-2
3.1
40.5
45.7
Minor BPS
53
0.09
1.8
66.34
39.7

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055