About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18018692_18018730_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18018692 - 18018730
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTTTTTGTACA
Flanking Amino Acid:
DYETEKCMPCVTKTLVCSQR
Intron Amino Acid Position:
1196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.9
0.83
0.8
83.2
31.9
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
52.1
0.06
1.8
66.93
39.6

Associated Gene:

Gene:
MUC6
Ensembl Gene ID:
ENSAPLG00000015143
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015803
17995819 - 18018873
23055