Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18020688_18021620_F

Intron Information:

Intron Rank:

128924

Intron Class:

major

Intron Phase:

Intron Coordinates:

18020688 - 18021620

Intron Length:

933

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTTGT

5'SS Class:

major

3'SS Sequence:

TTTACTCCAAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

TATTCTTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

71.5

41.1

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

63.9

0.31

1.1

65.3

35.2

Minor 5ss

40.7

-1

3.2

44.5

Minor BPS

70.8

0.73

1.5

84.68

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019371

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025211

18020606 - 18022646

2041

ENSAPLT00000023239

18020606 - 18021992

1387