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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_18052798_18053624_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18052798 - 18053624
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGATATTTAAAA
Flanking Amino Acid:
LRLEPNLQAQMYRLTLRTSK
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
59.1
0.28
1.6
67.67
37.9

Associated Gene:

Gene:
AP2A2
Ensembl Gene ID:
ENSAPLG00000016325
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037042
18052720 - 18101201
48482
ENSAPLT00000030543
18052720 - 18101201
48482
ENSAPLT00000017061
18052720 - 18101201
48482